bedshape

bedshape is a wrapper around Steven Busan’s shapemapper2 for transcriptome or genomic wide pre-aligned reads. bedshape is directly inspired by its predecessor quickShape by Evonne McArthur.

Contents

• Motivation
• Installation
• Quickstart
  • Using the profile subcommand
  • Using the alias subcommand
• Options
  • Sub-commands:
• Support